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Research paper | Open Access

Single nucleotide polymorphisms linked to quantitative trait loci for grain quality traits in wheat

Chunlian Lia,b,c, Guihua Baic,d( ), Shiaoman Chaoe, Brett Carverf, Zhonghua Wanga
College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China
State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China
Agronomy Department, Kansas State University, Manhattan, KS 66506, USA
Hard Winter Wheat Genetics Research Unit, USDA-ARS, Manhattan, KS 66506, USA
Cereal Crops Research Unit, USDA-ARS, Fargo, ND, USA
Department of Plant and Soil Science, Oklahoma State University, Stillwater, OK 74078, USA

Peer review under responsibility of Crop Science Society of China and Institute of Crop Sciences, CAAS.

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Abstract

Wheat (Triticum aestivum L.) grain quality traits that are controlled by quantitative traits loci (QTL) define suitable growing areas and potential end-use products of a wheat cultivar. To dissect QTL for these traits including protein content (GPC); test weight (TW); single kernel characterization system (SKCS)-estimated kernel weight (SKW); kernel diameter (KD); kernel hardness measured by near-infrared reflectance spectroscopy (NIRS) hardness index (NHI); and SKCS-hardness index (SHI), a high-density genetic map with single nucleotide polymorphism (SNP) and simple sequence repeat (SSR) markers was developed using recombinant inbred lines (RILs) derived from Ning7840 × Clark. The RILs were evaluated for these quality traits in seven Oklahoma environments from 2001 to 2003. A total of 41 QTL with additive effects on different traits were mapped on most wheat chromosomes, excluding 1A, 2A, 3D, 4D, 6D, and 7B. Seven chromosome regions showed either tightly linked QTL or QTL with pleiotropic effects on two to four traits. Ten pairs of QTL showed additive × additive effects (AA), four QTL were involved in additive × environment (AE) effects, and one was involved in AAE effects. Two to eleven QTL for each of the six traits and 139 tightly linked markers to these QTL were identified. The findings shed light on the inheritance of wheat grain quality traits and provide DNA markers for manipulating these important traits to improve quality of new wheat cultivars.

Keywords

EpistasisTriticum aestivumSNPGrain quality traitsQTL × environments interaction

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The Crop Journal
Volume 4 Issue 1,
February 2016
Pages 1-11
DOI: 10.1016/j.cj.2015.10.002
Cite this article:
Li C, Bai G, Chao S, et al. Single nucleotide polymorphisms linked to quantitative trait loci for grain quality traits in wheat. The Crop Journal, 2016, 4(1): 1-11. https://doi.org/10.1016/j.cj.2015.10.002

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Received: 03 September 2015
Revised: 29 October 2015
Accepted: 27 November 2015
Published: 04 December 2015
© 2015 Crop Science Society of China and Institute of Crop Science, CAAS.

This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
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