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Research paper | Open Access

QTL underlying iron and zinc toxicity tolerances at seedling stage revealed by two sets of reciprocal introgression populations of rice (Oryza sativa L.)

Huan Liua,1, Aijaz Soomrob,1, Yajun Zhuc, Xianjin Qiua, Kai Chenc, Tianqing Zhengb, Longwei Yanga, Danying Xinga( ), Jianlong Xub,c,d( )
Hubei Collaborative Innovation Center for Grain Industry, Yangtze University, Jingzhou 434025, China
Institute of Crop Science/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing 100081, China
Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China
Shenzhen Institute of Breeding for Innovation, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China

1 These authors contributed equally to this work.

Peer review under responsibility of Crop Science Society of China and Institute of Crop Science, CAAS.

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Abstract

Iron and zinc are two trace elements that are essential for rice. But they are toxic at higher concentrations, leading to severe rice yield losses especially in acid soils and inland valleys. In this study, two reciprocal introgression line (IL) populations sharing the same parents were used with high-density SNP bin markers to identify QTL tolerant to iron and zinc toxicities. The results indicated that the japonica variety 02,428 had stronger tolerance to iron and zinc toxicities than the indica variety Minghui 63. Nine and ten QTL contributing to iron and zinc toxicity tolerances, respectively, were identified in the two IL populations. The favorable alleles of most QTL came from 02,428. Among them, qFRRDW2, qZRRDW3, and qFRSDW11 appeared to be independent of genetic background. The region C11S49–C11S60 on chromosome 11 harbored QTL affecting multiple iron and zinc toxicity tolerance-related traits, indicating partial genetic overlap between the two toxicity tolerances. Our results provide essential information and materials for developing excellent rice cultivars with iron and/or zinc tolerance by marker-assisted selection (MAS).

Keywords

RiceQuantitative trait locus/loci (QTL)Reciprocal introgression linesIron toleranceZinc tolerance

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The Crop Journal
Volume 4 Issue 4,
August 2016
Pages 280-289
DOI: 10.1016/j.cj.2016.05.007
Cite this article:
Liu H, Soomro A, Zhu Y, et al. QTL underlying iron and zinc toxicity tolerances at seedling stage revealed by two sets of reciprocal introgression populations of rice (Oryza sativa L.). The Crop Journal, 2016, 4(4): 280-289. https://doi.org/10.1016/j.cj.2016.05.007

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Received: 22 February 2016
Revised: 14 May 2016
Accepted: 06 June 2016
Published: 14 June 2016
© 2016 Crop Science Society of China and Institute of Crop Science, CAAS.

This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
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