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Research paper | Open Access

Multiplex CRISPR/Cas9-mediated knockout of soybean LNK2 advances flowering time

Zhaobo Lia,b,1Qun Chengc,1Zhuoran Ganc,1Zhihong Houd,1Yuhang Zhangc,1Yongli LicHaiyang LieHaiyang NancCen YangcLinnan ChencSijia LucWenqian ShicLiyu ChencYanping WangfChao FangcLiping KongcTong Sua,bShichen Lia,bKun Koua,bLingshuang Wanga,bFanjiang Konga,c( )Baohui Liua,c( )Lidong Dongc( )
The Innovative Academy of Seed Design, Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 130102, Heilongjiang, China
University of Chinese Academy of Sciences, Beijing 100081, China
Innovation Center of Molecular Genetics and Evolution, School of Life Sciences, Guangzhou University, Guangzhou 510006, Guangdong, China
Agronomy College of Heilongjiang Bayi Agricultural University, Daqing 163319, Heilongjiang, China
National Center for Soybean Improvement, National Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China
Mudanjiang Branch, Heilongjiang Academy of Agricultural Sciences, Mudanjiang 157000, Heilongjiang, China

1 These authors contributed equally to this work.

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Abstract

Flowering time is an important agronomic trait for soybean yield and adaptation. However, the genetic basis of soybean adaptation to diverse latitudes is still not clear. Four NIGHT LIGHT-INDUCIBLE AND CLOCK-REGULATED 2 (LNK2) homeologs of Arabidopsis thaliana LNK2 were identified in soybean. Three single-guide RNAs were designed for editing the four LNK2 genes. A transgene-free homozygous quadruple mutant of the LNK2 genes was developed using the CRISPR (clustered regularly interspaced short palindromic repeats)/Cas9 (CRISPR-associated protein 9). Under long-day (LD) conditions, the quadruple mutant flowered significantly earlier than the wild-type (WT). Quantitative real-time PCR (qRT-PCR) revealed that transcript levels of LNK2 were significantly lower in the quadruple mutant than in the WT under LD conditions. LNK2 promoted the expression of the legume-specific E1 gene and repressed the expression of FT2a. Genetic markers were developed to identify LNK2 mutants for soybean breeding. These results indicate that CRISPR/Cas9-mediated targeted mutagenesis of four LNK2 genes shortens flowering time in soybean. Our findings identify novel components in flowering-time control in soybean and may be beneficial for further soybean breeding in high-latitude environments.

The Crop Journal
Pages 767-776
Cite this article:
Li Z, Cheng Q, Gan Z, et al. Multiplex CRISPR/Cas9-mediated knockout of soybean LNK2 advances flowering time. The Crop Journal, 2021, 9(4): 767-776. https://doi.org/10.1016/j.cj.2020.09.005

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Received: 19 April 2020
Revised: 16 June 2020
Accepted: 23 September 2020
Published: 17 November 2020
© 2021 Crop Science Society of China and Institute of Crop Science, CAAS.

This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

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