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Research paper | Open Access

A 48-bp deletion upstream of LIGULELESS 1 alters rice panicle architecture

Linhua Wua,bMin Hub,fShuwei LyuaWenfeng ChenaHang YuaQing LiuaWei HebChen Lia,c,d,e( )Zuofeng Zhub( )
Rice Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, Guangdong, China
National Center for Evaluation of Agricultural Wild Plants (Rice), Department of Plant Genetics and Breeding, China Agricultural University, Beijing 100193, China
Key Laboratory of Genetics and Breeding of High Quality Rice in Southern China (Co-construction by Ministry and Province), Ministry of Agriculture and Rural Affairs, Guangzhou 510640, Guangdong, China
Guangdong Key Laboratory of New Technology in Rice Breeding, Guangzhou 510640, Guangdong, China
Guangdong Rice Engineering Laboratory, Guangzhou 510640, Guangdong, China
State Key Laboratory for Rice Biology and Breeding, China National Rice Research Institute, Hangzhou 310006, Zhejiang, China
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Abstract

Panicle architecture is an agronomic determinant of crop yield and a target for cereal crop improvement. To investigate its molecular mechanisms in rice, we performed map-based cloning and characterization of OPEN PANICLE 1 (OP1), a gain-of-function allele of LIGULELESS 1 (LG1), controlling the spread-panicle phenotype. This allele results from a 48-bp deletion in the LG1 upstream region and promotes pulvinus development at the base of the primary branch. Increased OP1 expression and altered panicle phenotype in chimeric transgenic plants and upstream-region knockout mutants indicated that the deletion regulates spread-panicle architecture in the mutant spread panicle 1 (sp1). Knocking out BRASSINOSTEROID UPREGULATED1 (BU1) gene in the background of OP1 complementary plants resulted in compact panicles, suggesting OP1 may regulate inflorescence architecture via the brassinosteroid signaling pathway. We regard that manipulating the upstream regulatory region of OP1 or genes involved in BR signal pathway could be an efficient way to improve rice inflorescence architecture.

The Crop Journal
Pages 354-363
Cite this article:
Wu L, Hu M, Lyu S, et al. A 48-bp deletion upstream of LIGULELESS 1 alters rice panicle architecture. The Crop Journal, 2024, 12(2): 354-363. https://doi.org/10.1016/j.cj.2023.12.008

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Received: 14 August 2023
Revised: 12 December 2023
Accepted: 21 December 2023
Published: 26 January 2024
© 2024 Crop Science Society of China and Institute of Crop Science, CAAS.

This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

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