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Research Article | Open Access

Phylogenetic and taxonomic updates of Agaricales, with an emphasis on Tricholomopsis

Geng-Shen Wanga,b,c, Qing Caia,b, Yan-Jia Haod, Tolgor Baue, Zuo-Hong Chenf, Mei-Xiang Lig, Navarro Davidh,i, Nattapol Kraisitudomsookj, Zhu-Liang Yanga,b( )
Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany Chinese Academy of Sciences, Kunming, China
Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
School of Horticulture, Anhui Agricultural University, Hefei, China
Engineering Research Centre of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, China
Life Science College, Hunan Normal University, Changsha, China
State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, China
INRAE, Aix Marseille Université, UMR1163 Biodiversité et Biotechnologie Fongiques, Marseille, France
INRAE, Aix Marseille Université, CIRM-CF, Marseille, France
Department of Biology, Faculty of Science and Technology, Muban Chombueng Rajabhat University, Ratchaburi, Thailand
Show Author Information

Abstract

The order Agaricales was divided into eight suborders. However, the phylogenetic relationships among some suborders are largely unresolved, and the phylogenetic positions and delimitations of some taxa, such as Sarcomyxaceae and Tricholomopsis, remain unsettled. In this study, sequence data of 38 genomes were generated through genome skimming on an Illumina sequencing system. To anchor the systematic position of Sarcomyxaceae and Tricholomopsis, a phylogenetic analysis based on 555 single-copy orthologous genes from the aforementioned genomes and 126 publicly accessible genomes was performed. The results fully supported the clustering of Tricholomopsis with Phyllotopsis and Pleurocybella within Phyllotopsidaceae, which formed a divergent monophyletic major lineage together with Pterulaceae, Radulomycetaceae, and Macrotyphula in Agaricales. The analysis also revealed that Sarcomyxaceae formed a unique major clade. Therefore, two new suborders, Phyllotopsidineae and Sarcomyxineae, are proposed for the two major lineages. Analyses of 450 single-copy orthologous genes and four loci suggested that Tricholomopsis consisted of at least four clades. Tricholomopsis is subsequently subdivided into four distinct sections. Seventeen Tricholomopsis species in China, including six new species, are reported. Conoloma is established to accommodate T. mucronata. The substrate preference of Tricholomopsis species and the transitions of the pileate ornamentations among the species within the genus are discussed.

Keywords

taxonomyphylogenomicsnew taxasingle-copy orthologous genes

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Mycology
Volume 15 Issue 2,
June 2024
Pages 180-209
DOI: 10.1080/21501203.2023.2263031
Cite this article:
Wang G-S, Cai Q, Hao Y-J, et al. Phylogenetic and taxonomic updates of Agaricales, with an emphasis on Tricholomopsis. Mycology, 2024, 15(2): 180-209. https://doi.org/10.1080/21501203.2023.2263031

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Received: 14 August 2023
Accepted: 20 September 2023
Published: 07 November 2023
© 2023 The Author(s).

This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.
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