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Open Access | Just Accepted

A Comprehensive Investigation to Identify Prognostic mRNA and miRNA Signatures for Renal Cell Carcinoma Utilizing a Stratification-based Approach

Jiaqi Yu1,Jiayi Cai2,Aamir Fahira2Keyong Liao1Yani Tongjia3Yiming Shao4Zunnan Huang1( )

1 Key Laboratory of Computer-Aided Drug Design of Dongguan City, The First Dongguan Affiliated Hospital, Guangdong Medical University, School of Pharmacy, Dongguan 523710, China

2 Key Laboratory of Big Data Mining and Precision Drug Design of Guangdong Medical University, Key Laboratory for Research and Development of Natural Drugs of Guangdong Province, School of Pharmacy, Guangdong Medical University, Dongguan 523808, China

3 School of Public Health, Guangdong Medical University, Dongguan 523808, China

4 Dongguan Key Laboratory of Sepsis Translational Medicine, The First Dongguan Affiliated Hospital, Guangdong Medical University, Dongguan 523710, China

Jiaqi Yu and Jiayi Cai contributed equally to this work.

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Abstract

This study systematically investigates the role of mRNAs and miRNAs in renal cell carcinoma (RCC) and their potential as diagnostic and prognostic biomarkers via a stratification approach. By utilizing the Cancer Genome Atlas (TCGA) database, differentially expressed mRNAs (DEGs) and miRNAs (DEMs) were identified, and survival prognosis-related biomarkers were determined through Kaplan-Meier analysis and lasso regression. Prognostic models were established for RCC ethnicity, pathologic stages, and metastatic status, with validation through plotting risk heatmaps, risk curves, survival curves, and receiver operating characteristic (ROC) curves. A total of 45 mRNA and 33 miRNA biomarkers were identified across different prognostic models, resulting in enhanced prediction accuracy with increased stratification. The literature review confirms abnormal expressions of 28 and 15 prognostic RNAs, reported respectively in experimental and bioinformatics studies. The study also introduced 35 novel prognostic RNAs as potential treatment targets for RCC. The mRNA+miRNA prognostic models exhibited the most robust predictive capability, indicating their potential clinical relevance. Overall, the study contributes to a precise prognosis of RCC by exploring novel biomarkers and potential therapeutic targets.

Big Data Mining and Analytics
Cite this article:
Yu J, Cai J, Fahira A, et al. A Comprehensive Investigation to Identify Prognostic mRNA and miRNA Signatures for Renal Cell Carcinoma Utilizing a Stratification-based Approach. Big Data Mining and Analytics, 2024, https://doi.org/10.26599/BDMA.2024.9020039

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Received: 31 December 2023
Revised: 16 April 2024
Accepted: 05 June 2024
Available online: 15 July 2024

© The author(s) 2025.

The articles published in this open access journal are distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/).

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