Firmicutes including Clostridium IV and XIVa | SCFAs (acetic acid, propionic acid, butyric acid, isobutyric acid, 2-methylpropionic acid, pentanoic acid, isovalerate acid, and caproic acid) | Inhibit pathogen propagation; participate in cholesterol synthesis; provide energy for epithelial cells[57-59] |
Lactobacillus; Bifidobacterium; Enterobacter; Bacteroides; Clostridium | Bile acid (cholate, deoxycholic acid, chenodeoxycholic acid (CDCA), muricholic acid sodium, taurocholate, ursodeoxycholic, taurodeoxycholic acid) | Absorb fats and vitamins; improve fat absorption; maintain intestinal barrier function; transfer signals to regulate homeostasis[60-63] |
Faecalibacterium prausnitzii; Bifidobacterium | Choline metabolites (methyl amine, dimethyl amine, trimethylamine, N-trimethylamine oxide, dimethyl glycine and betaine) | Regulate lipid metabolism and glucose homeostasis; participate in nonalcoholic fatty liver diseases (NAFLDs), diet-induced obesity, diabetes and cardiovascular diseases[64-66] |
Clostridium difficile; Bifidobacterium; Lactobacillus | Phenolic, benzoyl and phenyl derivatives (benzoic acid, hippuric acid, tyrosine, styrene glycine, phenylacetylglutamine, phenylacetate, phenyl propionate, phenylpropanyl glycine and cinnamyl glycine) | Detoxify exogenous substances, indicate intestinal microbial composition and activity, 4-toluene sulfate was elevated in children with serious autism |
Clostridium spore; Escherichia coli | Indole derivative (N-acetyl tryptophan, indole acetic acid, isoamyl gallate (IAG), indole, indole sulfuric acid, indole-3-propionic acid, melatonin, melatonin-6-sulfuric acid, serotonin and 5-hydroxyindole) | Protect the gastrointestinal tract from stress induced injury, regulate the expression of pro-inflammatory gene, enhance the expression of anti-inflammatory gene, strengthen the epithelial cell barrier function; participate in gastrointestinal disease, brain-gut axis and some neural states[67-69] |
Bifidobacterium bifidum; Eubacterium lentum; Veillonella; Lactobacillus; Propionibacterium | Vitamins (vitamin K, vitamin B12, biotin (vitamin H), folic acid, thiamine (vitamin B1), riboflavin (vitamin B2) and vitamin B6) | Offer complementary endogenous vitamins, reinforce the immune function, play epigenetic role in regulating cell proliferation, vitamin K plays a role in blood clotting, maintain normal bone metabolism, anti-arterial calcification and other functions[70-76] |
Campylobacter jejuni; Clostridium thermosaccharolyticum | Polyamines (putrescine, cadaverine, spermidine and spermine) | Genetic toxicity of host, anti-inflammatory and anti-tumor effects, possible tumor markers[77, 78] |
B. bifidum; Roseburia; Lactobacillus; Klebsiella; Enterobacter coli; Citrobacter; Fusobacterium | Lipids (conjugated fatty acid, LPS, peptidoglycan, acylglecerol, sphingomyelin, cholesterol, lecithin, phosphorylethanolamine and triglyceride) | Intestinal permeability effects, activate the gut-brain-liver axis to mediate glucose homeostasis, LPS induces chronic systemic inflammation, combine fatty acids to improve hyperinsulinemia, promote immune system function and change lipoprotein profile, cholesterol is the foundation for production of sterols and cholic acids[79, 80] |
Bacteroides; Pseudomonas butyricum; Ruminococcus; Faecalis benthos; Micrococcus; B. bifidum; Lactobacillus | Other metabolites (D-lactic acid, formic acid, ethanol, methanol, succinic acid, lysine, glucose, urea, α-ketoisovaleric acid, creatine, creatinine anhydride, endocannabinoids, 2-arachidonoylglycerol (2-AG), N-arachidonic ethanolamine and LPS) | Direct or indirect synthesis or utilization of various compounds, including the regulation of related pathways such as the endocannabinoid system[79, 81-84] |