AI Chat Paper
Note: Please note that the following content is generated by AMiner AI. SciOpen does not take any responsibility related to this content.
{{lang === 'zh_CN' ? '文章概述' : 'Summary'}}
{{lang === 'en_US' ? '中' : 'Eng'}}
Chat more with AI
Home Mycology Article
Article Link
Collect
Submit Manuscript
Show Outline
Outline
Show full outline
Hide outline
Outline
Show full outline
Hide outline
Article | Open Access

The Xylariaceae as model example for a unified nomenclature following the “One Fungus-One Name” (1F1N) concept

Marc Stadlera( )Eric KuhnertaDerek PeršohbJacques Fournierc
Department Microbial Drugs, Helmholtz-Centre for Infection Research and Technical University of Braunschweig, Inhoffenstrasse 7, 38124 Braunschweig, Germany
Department of Mycology, University of Bayreuth, Universitätsstrasse 30, 95440 Bayreuth, Germany
Las Muros, 09420 Rimont, Ariége, France
Show Author Information

Abstract

The introduction of a One Fungus-One Name (1F1N) concept has led to intensive discussions among taxonomists. Based on the Xylariaceae, a hyperdiverse family of Ascomycota with over 1300 species, the advantages and pitfalls of these nomenclatural changes and their consequences for taxonomy and applied mycology are discussed. Historically, in the Xylariaceae, an 1F1N concept had already been realised: the types of all important genera are conserved. Most teleomorphs were discovered long before the anamorphic states and the latter did not receive separate names, hence no drastic taxonomic changes are expected. The new nomenclature calls for abandonment of some ill-defined anamorph genera, such as Muscodor. Other anamorph genera will be retained because their names refer to morphological symplesiomorphies that occur in several teleomorph genera. Various important taxa are only known from ancient specimens, and no DNA-based data are available. Much work still remains to be done to recollect these fungi, select epitypes, and settle their phylogenetic relationships. Until then, we recommend that taxonomic changes be applied at the suprageneric ranks whenever possible to maintain nomenclatural stability.

References

 

Acero FJ, González V, Sánchez-Ballesteros J, Rubio V, Checa J, Bills GF, Salazar O, Platas G, Peláez F. 2004. Molecular phylogenetic studies on the Diatrypaceae based on rDNA-ITS sequences. Mycologia. 96:249–259.

 

Adams GC, Wingfield MJ, Common R, Roux J. 2005. Phylogenetic relationships and morphology of. Cytospora species and related teleomorphs (Ascomycota, Diaporthales, Valsaceae) from Eucalyptus. Stud Mycol. 52:1–142.

 

Bills GF, González-Menéndez V, Martín J, Platas G, Fournier J, Peršoh D, Stadler M. 2012. Hypoxylon pulicicidum sp. nov. (Ascomycota, Xylariales), a pantropical Insecticide-producing endophyte. PLoS ONE 7(10):e46687. doi:10.1371/journal.pone.0046687

 

Bitzer J, Læssøe T, Fournier J, Kummer V, Decock C, Tichy HV, Piepenbring M, Peršoh D, Stadler M. 2008. Affinities of. Phylacia and the daldinoid Xylariaceae, inferred from chemotypes of cultures and ribosomal DNA sequences. Mycol Res. 112:251–270.

 

Braun U. 2012. The impacts of the discontinuation of dual nomenclature of pleomorphic fungi: the trivial facts, problems, and strategies. IMA Fungus. 3:81–86.

 

Carmarán CC, Romero AI, Giussani LM. 2006. An approach towards a new phylogenetic classification in Diatrypaceae. Fungal Divers. 23:67–87.

 

Carroll G. 1988. Fungal endophytes in stems and leaves: from latent pathogen to mutualistic symbiont. Ecology. 69:2–9.

 

Chambers C, Dutta SK, Crouch RJ. 1986. Neurospora crassa ribosomal DNA: sequence of internal transcribed spacer and comparison with N. intermedia and N. sitophila. Gene. 44:159–164.

 

Chesters CGC, Greenhalgh GN. 1964. Geniculosporium serpens gen. et sp. nov., the imperfect state of Hypoxylon serpens. Trans Brit Mycol Soc. 47:393–401.

 

Dennis RWG. 1961. Xylarioideae and Thamnomycetoideae of Congo. Bull Jardin Botan État Brux. 31:109–154.

 

Fournier J, Flessa F, Peršoh D, Stadler M. 2011. Three new Xylaria species from Southwestern Europe. Mycol Progr. 10:33–52.

 

Fournier J, Stadler M, Hyde KD, Duong LM. 2010. The new genus Rostrohypoxylon and two new Annulohypoxylon species from Northern Thailand. Fungal Divers. 40:23–36.

 

Gams W, Baral HO, Jaklitsch WM, Kirschner R, Stadler M. 2012a. Clarifications needed concerning the new Article 59 dealing with pleomorphic fungi. IMA Fungus. 3:175–177.

 

Gams W, Humber RA, Jaklitsch W, Kirschner R, Stadler M. 2012b. Minimizing the chaos following the loss of Article 59: suggestions for a discussion. Mycotaxon. 119:495–507.

 

Gams W, Jaklitsch W, Agerer R, Aguirre-Hudson B, Andersen B, Aptroot A, Barreto RW, Beck A, Benkert D, Braun U. 2011. A critical response to the ‘Amsterdam Declaration’. Mycotaxon. 116:501–512.

 

Gonzalez MC, Anaya AL, Glenn AE, Macias-Rubalcava ML, Hernandez-Bautista BE, Hanlin RT. 2009. Muscodor yucatanensis, a new endophytic ascomycete from Mexican chakah, Bursera simaruba. Mycotaxon. 110:363–372.

 

Guidot A, Johannesson H, Dahlberg A, Stenlid J. 2003. Parental tracking in the postfire wood decay ascomycete Daldinia loculata using highly variable nuclear gene loci. Mol Ecol. 12:1717–1730.

 

Hawksworth DL. 2011. A new dawn for the naming of fungi: impacts of decisions made in Melbourne in July 2011 on the future publication and regulation of fungal names. IMA Fungus. 2:155–162.

 

Hawksworth DL. 2012. Managing and coping with names of pleomorphic fungi in a period of transition. IMA Fungus. 3:81–86.

 

Hawksworth DL, Crous PW, Redhead SA, Reynolds DR, Samson RA, Seifert KA, Taylor JW, Wingfield MJ, Abaci Ö, Aime C, Asan A, Bai FY, de Beer ZW. 2011. The Amsterdam Declaration on fungal nomenclature. IMA Fungus. 2:105–112.

 

Hsieh HM, Lin CR, Fang MJ, Rogers JD, Fournier J, Lechat C, Ju YM. 2010. Phylogenetic status of Xylaria subgenus Pseudoxylaria among taxa of the subfamily Xylarioideae (Xylariaceae) and phylogeny of the taxa involved in the subfamily. Mol Phylogenet Evol. 54:957–969.

 

Hyde KD, McKenzie EHC, KoKo TW. 2011. Towards incorporating anamorphic fungi in a natural classification–checklist and notes for 2010. Mycosphere. 2:1–88.

 

Jaklitsch WM, Voglmayr H. 2012. Phylogenetic relationships of five genera of Xylariales and Rosasphaeria gen. nov. (Hypocreales). Fungal Divers. 52:75–98.

 
Ju YM, Rogers JD. 1996. A revision of the genus Hypoxylon. Mycologia Memoir No. 20. St. Paul (MN): APS Press; 365 pp.
 

Læssøe T. 1994. Index ascomycetum 1. Xylariaceae Syst Ascomycetum. 13:43–112.

 

Lee JSS, Kwan K, Jung HS. 2000. Phylogenetic analysis of Xylaria based on nuclear ribosomal ITS–5.8S–ITS2 sequences. FEMS Microbiol Lett. 187:89–93.

 

Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar, Buchner A, Lai T, Steppi S, Jobb G, et al. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363–1371.

 

Lumbsch HT, Huhndorf SM. 2010. Outline of Ascomycota–2009; Notes on ascomycete systematics. Nos. 4751–5113. Myconet. 14:1–69.

 

Miller JH. 1961. A monograph of the world species of Hypoxylon. Athens (GA): University of Georgia Press; 158p.

 

Mitchell AM, Strobel GA, Hess W M, Ezra D. 2008. Muscodor crispans, a novel endophyte from Ananas ananassoides in the Bolivian Amazon. Fungal Divers. 31:37–43.

 

Norvell LL. 2011. Melbourne approves a new CODE. Mycotaxon. 116:481–490.

 

Pažoutová S, Šrůtka P, Holuša J, Chudíčková M, Kolařík M. 2010. Diversity of xylariaceous symbionts in Xiphydria woodwasps: role of vector and a host tree. Fungal Ecol. 3:392–401.

 

Pelaez F, Gonzalez V, Platas G, Sanchez-Ballesteros J. 2008. Molecular phylogenetic studies within the family Xylariaceae based on ribosomal DNA sequences. Fungal Divers. 31:111–134.

 

Peršoh D, Melcher M, Graf K, Fournier J, Stadler M, Rambold G. 2009. Molecular and morphological evidence for the delimitation of Xylaria hypoxylon. Mycologia. 101:256–268.

 

Petrini O, Petrini LE, Rodrigues K. 1995. Xylariaceous endophytes: an exercise in biodiversity. Fitopatolo Brasiliensis. 20:531–539.

 

Pirozynski KA. 1974. Xenotypa Petrak and Graphostroma gen. nov., segregates from Diatrypaceae. Can J Bot. 52:2129–2135.

 
Preuss G. 1849. In: Rabenhorst GL editor (1949). Klotzschii herbarium vivum mycologicum, no. 1272 (Nodulisporium). Centuria.
 

Rappaz F. 1987. Taxonomie et nomenclature de Diatrype stigma, D. decorticata et D. undulata (Diatrypaceae, Ascomycetes). Mycotaxon. 30:209–219.

 

Rodrigues KF, Samuels GJ. 1989. Studies in the genus Phylacia (Xylariaceae). Mem New York Botanical Garden 49:290–297.

 

Rogers JD. 1981. Sarcoxylon and Entonaema (Xylariaceae). Mycologia. 73:28–61.

 

Rogers JD. 2000. Thoughts and musings about tropical Xylariaceae. Mycol Res. 104:1412–1420.

 

Rogers JD, Ju YM, San Martín F. 1997. Jumillera and Whalleya, new genera segregated from Biscogniauxia. Mycotaxon. 64:39–50.

 

Rogers JD, Ju YM, Watling R, Whalley AJS. 1999. A reinterpretation of Daldinia concentrica based upon a recently discovered specimen. Mycotaxon. 72:507–519.

 

Rogers JD, Laessøe T, Lodge DJ. 1991. Camillea: new combinations and a new species. Mycologia. 83:224–227.

 
Seifert K, Morgan-Jones G, Gams W, Kendrick B. 2011. The genera of Hyphomycetes. CBS Biodiversity Series 9. Utrecht: CBS Fungal Diversity Centre.
 

Seifert KA, Rossman AY. 2010. How to describe a new fungal species. IMA Fungus. 1:109–116.

 

Stadler M. 2011. Importance of secondary metabolites in the Xylariaceae as parameters for assessment of their taxonomy, phylogeny, and functional biodiversity. Curr Res Environ Appl Mycol. 1:75–133.

 

Stadler M, Fournier J, Gardt S, Peršoh D. 2010a. The phylogenetic position of Rhopalostroma as inferred from a polythetic approach. Persoonia. 25:11–21.

 

Stadler M, Fournier J, Læssøe T, Chlebicki A, Lechat C, Flessa F, Rambold G, Peršoh D. 2010b. Chemotaxonomic and phylogenetic studies of Thamnomyces (Xylariaceae). Mycoscience. 51:189–207.

 
Stadler M, Fournier J, Læssøe T, Lechat C, Tichy HV, Piepenbring M. 2008. Recognition of hypoxyloid and xylarioid Entonaema species from a comparison of holomorphic morphology, HPLC profiles, and ribosomal DNA sequences. Mycol Progr. 7: 53–73.
 

Stadler M, Hellwig V. 2005. Chemotaxonomy of the Xylariaceae and remarkable bioactive compounds from Xylariales and their associated asexual states. Recent Res Devel Phytochem. 9:41–93.

 
Stadler M, Læssøe T, Fournier J, Decock C, Schmieschek B, Tichy HV, Peršoh D. Forthcoming 2013. A polyphasic taxonomy of Daldinia (Xylariaceae). Stud Mycol. in press.
 

Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihoodbased phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 22:2688–2690.

 

Suwannarach N, Bussaban B, Hyde KD, Lumyong S. 2010. Muscodor cinnamomi, a new endophytic species from Cinnamomum bejolghota. Mycotaxon. 114:15–23.

 

Tang AMC, Jeewon R, Hyde KD. 2009. A re-evaluation of theevolutionary relationships within the Xylariaceae based on ribosomal and protein-coding gene sequences. Fungal Divers. 34:155–153.

 

Triebel D, Persoh D, Wollweber H, Stadler M. 2005. Phylogenetic relationships among Daldinia, Entonaema and Hypoxylon as inferred from ITS nrDNA sequences. Nova Hedw. 80:25–43.

 

Visser AA, Ros VID, de Beer ZW, Debets AJM, Hartog E, Kuyper TW, Laessoe T, Slippers B, Aanen DK. 2009. Levels of specificity of Xylaria species associated with fungus-growing termites: a phylogenetic approach. Mol Ecol. 18:553–567.

 

Whalley AJS. 1996. The xylariaceous way of life. Mycol Res. 100:897–922.

 

Wijayawardene DNN, McKenzie EHC, Hyde KD. 2012. Towards incorporating anamorphic fungi in a natural classification–checklist and notes for 2011. Mycosphere. 3:157–228.

 

Worapong J, Strobel G, Ford EJ, Li JY, Baird G, Hess WM. 2001. Muscodor albus anam. gen. et sp. nov., an endophyte from Cinnamomum zeylanicum. Mycotaxon. 79:67–79.

Mycology
Pages 5-21
Cite this article:
Stadler M, Kuhnert E, Peršoh D, et al. The Xylariaceae as model example for a unified nomenclature following the “One Fungus-One Name” (1F1N) concept. Mycology, 2013, 4(1): 5-21. https://doi.org/10.1080/21501203.2013.782478

118

Views

81

Crossref

N/A

Web of Science

130

Scopus

Altmetrics

Received: 29 January 2013
Accepted: 01 March 2013
Published: 13 May 2013
© 2013 Mycological Society of China
Return