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Article | Open Access

A preliminary DNA barcode selection for the genus Russula (Russulales, Basidiomycota)

Guo-Jie Lia,b,, Rui-Lin Zhaob,c( ), Chu-Long Zhanga, Fu-cheng Lina( )
State Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, China
State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Chaoyang District, Beijing, China
College of Life Sciences, University of Chinese Academy of Sciences, Huairou District, Beijing, China

This article has been republished with minor changes. These changes do not impact the academic content of the article.

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Abstract

Russula is a worldwid genus which has a high species diversity. Aiming accurate and rapid species identification, candidate genes nLSU (28S), ITS, tef-1α, mtSSU, rpb1, and rpb2, were analysed as potential DNA barcodes. This analysis included 433 sequences from 38 well-circumscribed Russula species of eight subgenera. Two vital standards were analysed for success species identification using DNA barcodes, specifically inter- and intra-specific variations together with the success rates of PCR amplification and sequencing. Although the gap between inter- and intra-specific variations was narrow, ITS met the qualification standards for a target DNA barcode. Overlapping inter- and intra-specific pairwise distances were observed in nLSU, tef-1α, mtSSU, and rpb2. The success rates of PCR amplification and sequencing in mtSSU and rpb1 were lower than those of others. Gene combinations were also investigated for resolution of species recognition. ITS-rpb2 was suggested as the likely target DNA barcode for Russula, owing to the two viatal standards above. Since nLSU has the lowest minimum of inter-specific variation, and tef-1α has the highest overlap between intra- and inter-species variations among the candidate genes, they are disqualified from the selection for DNA barcode of Russula.

Keywords

fungal identificationBarcode gapintra-and inter-specific variationRussulaceaespecies recognition

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Mycology
Volume 10 Issue 2,
June 2019
Pages 61-74
DOI: 10.1080/21501203.2018.1500400
Cite this article:
Li G-J, Zhao R-L, Zhang C-L, et al. A preliminary DNA barcode selection for the genus Russula (Russulales, Basidiomycota). Mycology, 2019, 10(2): 61-74. https://doi.org/10.1080/21501203.2018.1500400

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Received: 06 May 2018
Accepted: 10 July 2018
Published: 23 August 2018
© 2018 The Author(s).

This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
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