Hypocrealean fungi (Ascomycota) are known for their diversity of lifestyles. Their vital influences on agricultural and natural ecosystems have resulted in a number of sequenced genomes, which provide essential data for genomic analysis. Totally, 45 hypocrealean fungal genomes constructed a phylogeny. The phylogeny showed that plant pathogens in Nectriaceae diverged earliest, followed by animal pathogens in Cordycipitaceae, Ophiocordycipitaceae and Clavicipitaceae with mycoparasites in Hypocreaceae. Insect/nematode pathogens and grass endophytes in Clavicipitaceae diverged at last. Gene families associated with host-derived nutrients are significantly contracted in diverged lineages compared with the ancestral species. Introgression was detected in certain lineages of hypocrealean fungi, and the main functions of the genes located in the introgressed regions are involved in host recognition, transcriptional regulation, stress response and cell growth regulation. These results indicate that contraction of gene families and introgression might be main mechanisms to drive lifestyle differentiation and evolution and host shift of hypocrealean fungi.

Our planet is dominant with cold environments that harbour enormously diverse cold-adapted fungi comprising representatives of all phyla. Investigation based on culture-dependent and independent methods has demonstrated that cold-adapted fungi are cosmopolitan and occur in diverse habitants and substrates. They live as saprobes, symbionts, plant and animal parasites and pathogens to perform crucial functions in different ecosystems. Pseudogymnoascus destructans caused bat white-nose syndrome and Ophiocordyceps sinensis as Chinese medicine are the representative species that have significantly ecological and economic significance. Adaptation to cold niches has made this group of fungi a fascinating resource for the discovery of novel enzymes and secondary metabolites for biotechnological and pharmaceutical uses. This review provides the current understanding of living strategy and ecological functions of cold-adapted fungi, with particular emphasis on how those fungi overcome the extreme low temperature and perform their ecological function.

Ling-zhi is a medicinal herb that generally refers to a fungus in the genus Ganoderma. It has been used as a medicinal mushroom in traditional Chinese medicine for more than 2000 years. Mycologists at the Institute of Microbiology, Chinese Academy of Sciences (IMCAS) first artificially cultivated the Ling-zhi fruiting body in the late 1960s (X.J. Liu’s team). In IMCAS, different research teams have extensively studied Ling-zhi in the aspects of national resource surveys, systematic taxonomy, chemical analysis, and processing for medicinal and health applications. The research results from IMCAS have provided essential support and prompted the development of the Ling-zhi industry in China to some extent. This review aims to summarize the history of research on Ling-zhi in IMCAS and its role in the development of the Ling-zhi economy.

Cordyceps, as a general term, describes a group of ascomycetous fungi growing on arthropods and other related fungi. Some cordyceps have been used in traditional Chinese medicine for centuries and cordyceps-derived products are currently a big industry in China. A number of medicinal and health products have been developed and extensively commercialized from natural Chinese cordyceps, its anamorphic fungus (Hirsutella sinensis), and other fungi known as Chinese cordyceps. The lack of a defined classification system for medicinal cordyceps fungi is a source of confusion in the industry and the public, and even among pharmaceutical scientists. This review summarizes the cordyceps fungi currently used in the industry in China with a special reference to clarify Chinese cordyceps and associated fungi. Cordyceps militaris, Cordyceps guangdongensis and Isaria cicadae are well recognized and commercialized cordyceps fungi in China. Except the natural Chinese cordyceps and its anamorphic fungus, Paecilomyces hepiali, Mortierella hepiali, Cephalosporium sinensis and Clonostachys rosea isolated from natural Chinese cordyceps are classified as Chinese cordyceps–associated fungi. P. hepiali is a cordyceps fungus based on current phylogenetic analysis of Hypocreales, while M. hepiali is a fungus in the Zygomycetes and should only be treated as associated fungus of Chinese cordyceps. C. sinensis and C. rosea belong to the Hypocreales and their relationship to cordyceps fungi should be further studied. The exploitation of the resources of cordyceps fungi and their quality control in the industry should be major topics for future studies. Cooperation between the industry and the research community will enhance the whole cordyceps industry.

The Chinese caterpillar fungus, Ophiocordyceps sinensis (syn. Cordyceps sinensis), is one of the most famous and perhaps the most expensive fungal species in the world. Its biology largely remains a secret, and its commercial cultivation is still a dream. Owing to its medicinal, economic, social and ecological importance, and its limited distribution mainly in China, O. sinensis is herein nominated as the national fungus of China and the fungus of the year (2012) for the journal Mycology. To clarify the confusion, a standard nomenclature is proposed and recommended in this paper for a comprehensive understanding of the terms related to Cordyceps sensu lato and O. sinensis. We also review recent research on the life cycle and distribution of this fungus, parasitism of ghost moths by the fungus, the microbial community of natural Chinese cordyceps and its insect hosts, as well as the secondary metabolites produced by the fungi isolated from natural Chinese cordyceps. By taking advantage of various expertises as well as the government support, we believe that the biological secrets of O. sinensis will be unravelled gradually, and the sustainable development and utilization of this traditional medicine will be fully achieved in the future.

Ophiocordyceps sinensis is a well-known insect fungus, naturally distributed in the Tibetan Plateau of Asia. It has been long known by its synonym Cordyceps sinensis both in scientific and non-scientific communities but was recently transferred to Ophiocordyceps. Over the last 300 years, the morphological characters of this taxon have been studied by different professionals and experts, such as religious persons, travelers, entomologists, pharmacologists and mycologists. Morphological descriptions of mature O. sinensis stroma based on recent studies are compared in this study with those of the type specimens of Berkeley (Lond J Bot. 2:205–211;1843). A literature review indicates that the specimens of Berkeley (1843) are immature. New names have been proposed for O. sinensis-like species from alpine regions, such as O. gansuënsis, O. crassispora, O. kangdingensis, O. multiaxialis and O. nepalensis, and it is not obvious how these differ from O. sinensis. Epitypification and revision of O. sinensis is, therefore, essential to resolve the taxonomic ambiguity of O. sinensis and related species.